Fix some include paths

Marlin/src/feature/fwretract.cpp

Marlin/src/feature/pause.cpp

Marlin/src/module/configuration_store.cpp

Marlin/src/module/delta.cpp

Marlin/src/module/endstops.cpp

Marlin/src/module/motion.h

Marlin/src/module/planner.cpp

Marlin/src/module/probe.cpp

Marlin/src/module/stepper.cpp

Marlin/src/module/stepper.h

Marlin/src/module/stepper_indirection.cpp

Marlin/src/module/tool_change.cpp