Based on #10216

[2.0.x] Fix TMC sanity checks that always fail

[2.0.x] DUE debugging: Solve WDT startup delay, add traceback & crash report uses programming port baud rate

[2.0.x] DUE - change hardware SPI to mode 0change to mode 0

Followup to #10102

Now the Crash reporter uses the configured BAUDRATE to send the report through the Programming port. And also shows the traceback of functions as discussed. For that latest feature to work, you need to compile the project with -funwind-tables and -mpoke-function-name compiler flags

As Bob-The-Khun suggested, resetting the USB peripheral solves the huge startup delays that happen when a WDT reset happens and we are connected through the native port

* Automatically reset stepper timeout in manage_inactivity

Any code that adds moves to the planner can skip resetting the stepper timeout. We can let `idle` / `manage_inactivity` reset the timer whenever it detects any moves in the planner.

* blocks_queued => has_blocks_queued

- Watchdog reset during SD Card initialization.
- Move `DebugMonitor` to `DebugMonitor_Due.cpp`.
- Since the watchdog is enabled on boot do extra resets during init.
- Have `thermalManager` do watchdog reset before its ISR starts to prevent reset.
- Ensure that timers are stopped before reprogramming them to address tone issues.
- Improve SAM3XE reset when reflashed through the native port.

Fix #10098

[2.0.x] More complete Trinamic driver options

- Fix Autotune Thermal Protection
- Make 2 constants in autotune configurable

Thanks to Evgeny Kotsuba!